Research methods guides

Plain-English how-tos for the parts of research that trip people up — written by Dr. Rafiq Muhammad, MD, PhD, and paired with a free tool wherever the maths or structure can be automated. No jargon for its own sake, no signup.

📊 Research by the numbers — what the evidence says about reproducibility & integrity, fully cited →

Statistics

Why a correlation never proves cause, the confounder and reverse-causation traps, and what causation takes.

One-sample, independent, paired — when to use each, the assumptions, and what the result tells you.

What it tests, why not to run lots of t-tests, one-way vs two-way, and why you need a post-hoc test.

Research Design

Experimental, cross-sectional, longitudinal, case study — what each answers and when to use it.

Measuring the right thing vs measuring it consistently — the types of each and how to check them.

Methods are the techniques; methodology is the justification for why they fit your question and paradigm.

Positivism, interpretivism, pragmatism — their assumptions and how your paradigm shapes the whole design.

What a case is, the types, how to bound it, and how to answer the generalisability critique.

Literature Review

How to synthesize across sources instead of summarizing each — with a template.

Qualitative Methods

Building theory from data — open/axial/selective coding, constant comparison, and the variants.

Credibility, transferability, dependability, confirmability — and where saturation fits.

When the interaction is the data — size and number, the moderator’s job, and group dynamics.

The systematic, sometimes-countable cousin of thematic analysis — and how the two differ.

The study of lived experience — descriptive vs interpretive (IPA), bracketing, and the analysis.

How qualitative sample size is justified — what saturation means, the types, and how to report it.

Mixed Methods

The four core designs — convergent, explanatory, exploratory, embedded — and how to choose from timing and priority.

Qualitative first to explore and build an instrument, then quantitative to test it — and the make-or-break build step.

Both strands at once, analysed separately, then merged — how to merge and how to handle divergence.

Systematic Review

Write and register your method before you start — what a protocol contains and why PRISMA-P/PROSPERO matter.

The PRISMA 2020 boxes, how every number must reconcile, and how to fill it in — with a free generator.

RoB 2, ROBINS-I, Newcastle–Ottawa, CASP — and how GRADE rates the whole body of evidence.

Pooled effects, forest plots, fixed vs random effects, heterogeneity, and when not to pool.

Proposals & Funding

The established theory you use as a lens — and how it differs from a conceptual framework.

Academic Writing

The four moves of a structured abstract — written last, read first, often all a reviewer reads.

Clarity, concision, cohesion, and tone — the self-edit passes that make prose readable.

Restate the contribution, not a summary — answer the question, give implications, add no new data.

Why changing a few words is still plagiarism, how to genuinely paraphrase, and why you cite even when you do.

Data Collection

Nominal, ordinal, interval, ratio — and why the level decides which statistics are legal.

AI in Research

Why AI can’t be an author, what policies require, and how to write a disclosure statement.

Legitimate drafting and editing help — what’s acceptable, and how to stay your own author.

Code, don’t compute; AI-assisted qualitative coding; and the verification & confidentiality rules.

A map of the tools by job, why source-grounded beats a chatbot, and how to choose one.

PhD Journey

The real differences in purpose, time, cost, and careers — and how to choose.

What each year looks like — proposal, upgrade, data, writing up — and how to stay on pace.

Imposter syndrome, motivation, isolation, and burnout — and what actually helps.

Dissertation & Thesis

Why the two terms swap meaning between the US and UK — and which one your institution means.

Justify, don’t just describe — what to include and the methods-vs-methodology distinction.

Interpret, don’t restate — the structure, handling limitations, and not overclaiming.

Pair the guides with the tools

Every guide here links to a matching free tool — browse all 18, from the statistical test selector and power calculator to the PRISMA diagram generator and citation formatter. Or explore the Mastering Research book series the guides are drawn from.

Free tools → The books →